diff --git a/src/MakePhar/Manifest.php b/src/MakePhar/Manifest.php
index 4b34fc4..b99d875 100644
--- a/src/MakePhar/Manifest.php
+++ b/src/MakePhar/Manifest.php
@@ -211,10 +211,10 @@ class Manifest
                 $it = new \RecursiveIteratorIterator(new \RecursiveDirectoryIterator($source->path));
                 foreach ($it as $item) {
                     if ($item->isDir()) continue;
-                    $items[] = (object)['src'=>$item->getPathname(),'dest'=>null];
+                    $items[] = (object)['src'=>realpath($item->getPathname()),'dest'=>$item->getPathname()];
                 }
             } elseif ($source->type == 'file') {
-                $items[] = (object)['src'=>$source->path,'dest'=>null];
+                $items[] = (object)['src'=>realpath($source->path),'dest'=>$item->getPathname()];
             } else {
                 log_warn("Unsupported source type: %s", $source->type);
             }
diff --git a/src/MakePhar/PharBuilder.php b/src/MakePhar/PharBuilder.php
index c342f0e..76efd9c 100644
--- a/src/MakePhar/PharBuilder.php
+++ b/src/MakePhar/PharBuilder.php
@@ -52,7 +52,7 @@ class PharBuilder
         $size_tot = 0; $size_min = 0;
         foreach ($this->files as $file) {
             $i++;
-            $tp = dirname($file->src);
+            $tp = dirname($file->dest);
             if (($tp!=$lp) && (IS_TTY)) {
                 $lp=$tp;
                 printf("\r\e[K%d/%d %s", $i, $t, $tp);
@@ -66,7 +66,7 @@ class PharBuilder
             } else {
                 $size_tot += filesize($file->src);
                 $size_min += filesize($file->src);
-                $phar->addFile($file->dest?:$file->src, $file->src);
+                $phar->addFile($file->src, $file->dest);
             }
         }
         (IS_TTY) && printf("\r\e[K");